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ESSAY: Is Doomsday Coming? Perhaps, but Not in 2012
By DENNIS OVERBYE, The New York Times, November 17, 2009

NASA said last week that the world was not ending — at least anytime soon. Last year, CERN, the European Center for Nuclear Research, said the same thing, which I guess is good news for those of us who are habitually jittery. How often do you have a pair of such blue-ribbon scientific establishments assuring us that everything is fine?

On the other hand, it is kind of depressing if you were looking forward to taking a vacation from mortgage payments to finance one last blowout.

CERN’s pronouncements were intended to allay concerns that a black hole would be spit out of its new Large Hadron Collider and eat the Earth.

The announcements by the National Aeronautics and Space Administration, in the form of several Web site postings and a video posted on YouTube, were in response to worries that the world will end on Dec. 21, 2012, when a 5,125-year cycle known as the Long Count in the Mayan calendar supposedly comes to a close.

The doomsday buzz reached a high point with the release of the new movie “2012,” directed by Roland Emmerich, who previously inflicted misery on the Earth from aliens and glaciers in “Independence Day” and “The Day After Tomorrow.”

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OBSERVATORY: Digging Into the Science of That Old-Book Smell
By HENRY FOUNTAIN, The New York Times, November 17, 2009

If you have torn yourself away from the virtual library that is the Internet long enough to visit a real library, you know that the smell of old books — musty, slightly acidic, even grassy — is instantly recognizable. But is it quantifiable? And if so, might old-book odor prove useful to librarians and conservators charged with preserving collections?

Matija Strlic, a researcher with the Center for Sustainable Heritage at University College London, thinks it might. With colleagues in Slovenia and with the assistance of the National Archives of the Netherlands, he has published proof-of-concept research that shows that it is possible to understand both the composition and condition of old paper by analyzing the volatile organic compounds they emit.

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GLOBAL UPDATE: Congo’s Army Accused of Striking Villages as Refugees Waited for Measles Shots
By DONALD G. McNEIL Jr., The New York Times, November 17, 2009

The medical charity Doctors Without Borders has accused the Congolese Army of attacking the villages of Rwandan refugees as they waited for measles shots offered by the charity.

Thousands of civilians gathered for shots at seven sites in a region of the former Zaire controlled by remnants of the Hutu militias who led the 1994 genocide against Tutsis in neighboring Rwanda.

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FINDINGS: A Case in Antiquities for ‘Finders Keepers’
By JOHN TIERNEY, The New York Times, November 17, 2009

Zahi Hawass regards the Rosetta Stone, like so much else, as stolen property languishing in exile. “We own that stone,” he told Al Jazeera, speaking as the secretary general of Egypt’s Supreme Council of Antiquities.

The British Museum does not agree — at least not yet. But never underestimate Dr. Hawass when it comes to this sort of custody dispute. He has prevailed so often in getting pieces returned to what he calls their “motherland” that museum curators are scrambling to appease him.

Last month, after Dr. Hawass suspended the Louvre’s excavation in Egypt, the museum promptly returned the ancient fresco fragments he sought. Then the Metropolitan Museum of Art made a pre-emptive display of its “appreciation” and “deep respect” by buying a piece of a shrine from a private collector so that it could be donated to Egypt.

Now an official from the Neues Museum in Berlin is headed to Egypt to discuss Dr. Hawass’s demand for its star attraction, a bust of Nefertiti.

These gestures may make immediate pragmatic sense for museum curators worried about getting excavation permits and avoiding legal problems. But is this trend ultimately good for archaeology?

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18 and Under: Fearing a Flu Vaccine, and Wanting More of It
By PERRI KLASS, M.D., The New York Times, November 10, 2009

When I tell nonmedical friends that our clinic is vaccinating children against the H1N1 flu virus, here is what they say.

With about half, it is something like: “Oh, my God, our doctor doesn’t have it! Can you get me a dose?” And with the other half, it is something like, “Oh, my God, that brand-new vaccine — do you really think it’s safe?”

There is a peculiar duality in the collective cultural mind just now, a kind of pandemic doublethink. Other doctors I know are all eagerly having their own children immunized. Many are answering frantic calls from people desperate for the vaccine. But at the same time, we are all coming up against parents who are determined to refuse that same vaccine.

Wondering what history might have to say about this incongruous state of affairs, I called David M. Oshinsky, a professor of history at the University of Texas who wrote the Pulitzer Prize-winning “Polio: An American Story” (Oxford, 2005). Dr. Oshinsky compared the current vaccination campaign with two previous situations.

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Observatory: North American Origins for the Falklands Wolf
By HENRY FOUNTAIN, The New York Times, November 10, 2009

The Falklands wolf has puzzled evolutionary biologists since Charles Darwin first encountered it during the voyage of the Beagle in the 1830s. It was the only native land mammal on the Falkland Islands, which are 300 miles off the coast of Argentina. No one knew how it got there or what mainland animals it was descended from — and it did not help that the wolf was hunted to extinction by 1876.

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Mind: A Dream Interpretation: Tuneups for the Brain
By BENEDICT CAREY, The New York Times, November 10, 2009

It’s snowing heavily, and everyone in the backyard is in a swimsuit, at some kind of party: Mom, Dad, the high school principal, there’s even an ex-girlfriend. And is that Elvis, over by the piñata?

Uh-oh.

Dreams are so rich and have such an authentic feeling that scientists have long assumed they must have a crucial psychological purpose. To Freud, dreaming provided a playground for the unconscious mind; to Jung, it was a stage where the psyche’s archetypes acted out primal themes. Newer theories hold that dreams help the brain to consolidate emotional memories or to work though current problems, like divorce and work frustrations.

Yet what if the primary purpose of dreaming isn’t psychological at all?

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Afloat in the Ocean, Expanding Islands of Trash
By LINDSEY HOSHAW, The New York Times, November 10, 2009

ABOARD THE ALGUITA, 1,000 miles northeast of Hawaii — In this remote patch of the Pacific Ocean, hundreds of miles from any national boundary, the detritus of human life is collecting in a swirling current so large that it defies precise measurement.

Light bulbs, bottle caps, toothbrushes, Popsicle sticks and tiny pieces of plastic, each the size of a grain of rice, inhabit the Pacific garbage patch, an area of widely dispersed trash that doubles in size every decade and is now believed to be roughly twice the size of Texas. But one research organization estimates that the garbage now actually pervades the Pacific, though most of it is caught in what oceanographers call a gyre like this one — an area of heavy currents and slack winds that keep the trash swirling in a giant whirlpool.

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Well: A Marathon Run in the Slow Lane
By TARA PARKER-POPE, The New York Times, November 3, 2009

After a 10-kilometer road race this summer, a friend apologized for missing me at the finish line. The truth was, she hadn’t lost me in the crowd. She just didn’t wait long enough.

I’m a slow runner. A really slow runner. In that field of 625, I finished in 619th place.

There was a time when I was embarrassed by my painfully slow pace, but not anymore. Since I began training for a marathon this spring, I’ve discovered that the view is a lot more interesting in the back of the pack.

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Fathers Gain Respect From Experts (and Mothers)
By LAURIE TARKAN, The New York Times, November 3, 2009

It used to irk Melissa Calapini when her 3-year-old daughter, Haley, hung around her father while he fixed his cars. Ms. Calapini thought there were more enriching things the little girl could be doing with her time.

But since the couple attended a parenting course — to save their relationship, which had become overwhelmed by arguments about rearing their children — Ms. Calapini has had a change of heart. Now she encourages the father-daughter car talk.

“Daddy’s bonding time with his girls is working on cars,” said Ms. Calapini, of Olivehurst, Calif. “He has his own way of communicating with them, and that’s O.K.”

As much as mothers want their partners to be involved with their children, experts say they often unintentionally discourage men from doing so. Because mothering is their realm, some women micromanage fathers and expect them to do things their way, said Marsha Kline Pruett, a professor at the Smith College School for Social Work at Smith College and a co-author of the new book “Partnership Parenting,” with her husband, the child psychiatrist Dr. Kyle Pruett (Da Capo Press).

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In the Mediterranean, Killer Tsunamis From an Ancient Eruption
By WILLIAM J. BROAD, The New York Times, November 3, 2009

The massive eruption of the Thera volcano in the Aegean Sea more than 3,000 years ago produced killer waves that raced across hundreds of miles of the Eastern Mediterranean to inundate the area that is now Israel and probably other coastal sites, a team of scientists has found.

The team, writing in the October issue of Geology, said the new evidence suggested that giant tsunamis from the catastrophic eruption hit “coastal sites across the Eastern Mediterranean littoral.” Tsunamis are giant waves that can crash into shore, rearrange the seabed, inundate vast areas of land and carry terrestrial material out to sea.

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Observatory: Research at the Source of a Pennsylvania Flood
By HENRY FOUNTAIN, The New York Times, October 27, 2009

Like many people who come to Johnstown, Pa., Carrie Davis Todd, a hydrologist who was hired to teach at a local university a little over a year ago, was curious about the great Johnstown Flood of 1889, in which 2,209 people were killed when a dam failed 14 miles away. “One of the first things I did was go out and look at the dam site,” Dr. Davis Todd said.

The lake behind the dam held a huge volume of water that roared down the winding course of the Little Conemaugh River before slamming into Johnstown in one of the worst disasters in American history. While there were many witness accounts of the dam failure and the torrent of water that ensued, Dr. Davis Todd, an assistant professor of geology at the University of Pittsburgh at Johnstown, was surprised to find that the beginnings of the flood had never been rigorously assessed.

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Observatory: Two-Pound Dinosaur Holds North American Record
By HENRY FOUNTAIN, The New York Times, October 27, 2009

Small dinosaurs are big these days. Researchers recently announced the discovery of a tiny prototype of a Tyrannosaurus from China. Now paleontologists are reporting the smallest dinosaur ever found in North America.

The animal, Fruitadens haagarorum, had a body length of about 30 inches and weighed an estimated 2 pounds.

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CT scan, left, of a female skull at a burial site at Ur. Women were buried with elaborate adornments, right, and warriors with their weapons.

At Ur, Ritual Deaths That Were Anything but Serene
By JOHN NOBLE WILFORD, The New York Times, October 27, 2009

A new examination of skulls from the royal cemetery at Ur, discovered in Iraq almost a century ago, appears to support a more grisly interpretation than before of human sacrifices associated with elite burials in ancient Mesopotamia, archaeologists say.

Palace attendants, as part of royal mortuary ritual, were not dosed with poison to meet a rather serene death. Instead, a sharp instrument, a pike perhaps, was driven into their heads.

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Basics: A Molecule of Motivation, Dopamine Excels at Its Task
By NATALIE ANGIER, The New York Times, October 27, 2009

If you’ve ever had a problem with rodents and woken up to find that mice had chewed their way through the Cheerios, the Famous Amos, three packages of Ramen noodles, and even that carton of baker’s yeast you had bought in a fit of “Ladies of the Canyon” wistfulness, you will appreciate just how freakish is the strain of laboratory mouse that lacks all motivation to eat.

The mouse is physically capable of eating. It still likes the taste of food. Put a kibble in its mouth, and it will chew and swallow, all the while wriggling its nose in apparent rodent satisfaction.

Yet left on its own, the mouse will not rouse itself for dinner. The mere thought of walking across the cage and lifting food pellets from the bowl fills it with overwhelming apathy. What is the point, really, of all this ingesting and excreting? Why bother? Days pass, the mouse doesn’t eat, it hardly moves, and within a couple of weeks, it has starved itself to death.

Behind the rodent’s fatal case of ennui is a severe deficit of dopamine, one of the essential signaling molecules in the brain. Dopamine has lately become quite fashionable, today’s “it” neurotransmitter, just as serotonin was “it” in the Prozac-laced ’90s.

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Cancers Can Vanish Without Treatment, but How?
By GINA KOLATA, The New York Times, October 27, 2009

Call it the arrow of cancer. Like the arrow of time, it was supposed to point in one direction. Cancers grew and worsened.

But as a paper in The Journal of the American Medical Association noted last week, data from more than two decades of screening for breast and prostate cancer call that view into question. Besides finding tumors that would be lethal if left untreated, screening appears to be finding many small tumors that would not be a problem if they were left alone, undiscovered by screening. They were destined to stop growing on their own or shrink, or even, at least in the case of some breast cancers, disappear.

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Mind: When Parents Are Too Toxic to Tolerate
By RICHARD A. FRIEDMAN, M.D., October 20, 2009

You can divorce an abusive spouse. You can call it quits if your lover mistreats you. But what can you do if the source of your misery is your own parent?

Granted, no parent is perfect. And whining about parental failure, real or not, is practically an American pastime that keeps the therapeutic community dutifully employed.

But just as there are ordinary good-enough parents who mysteriously produce a difficult child, there are some decent people who have the misfortune of having a truly toxic parent.

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Remarkable Creatures: For Fish in Coral Reefs, It’s Useful to Be Smart
By SEAN B. CARROLL, October 20, 2009

I have long suspected that fish are smarter than we give them credit for.

As a child, I had an aquarium with several pet goldfish. They certainly knew it was feeding time when my hand appeared over their tank, and they excitedly awaited their delicious fish flakes.

They also exhibited a darker, disturbing behavior. Evidently, a safe life with abundant food was not fulfilling. From time to time, either sheer ennui or the long gray Toledo winter got to one of the fish and it ended its torment with a leap to my bedroom floor.

Maybe my anthropomorphizing is a bit over the top. But, really, just how smart are fish? Can they learn?

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Researchers Create Artificial Memories in the Brain of a Fruitfly
By NICHOLAS WADE, October 20, 2009

As part of a project to understand how the brain learns, biologists have written memories into the cells of a fruitfly’s brain, making it think it had a terrible experience.

The memory trace was written by shining light into the fly’s brain and activating a special class of cells involved in learning how to avoid an electric shock.

The goal of the research is not to give flies nightmares but rather to understand how learning in general works, from flies to people. “In the case of the fly, where we have a numerically rather simple nervous system that does something rather complex, I think we have a chance to break open the black box and understand it,” said Gero Miesenböck of the University of Oxford, leader of the team that has developed the new technique.

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Really? The Claim: Garlic Can Be Helpful in Warding Off a Cold
By ANAHAD O’CONNOR, October 20, 2009

THE FACTS For centuries, garlic has been extolled not just for its versatility in the kitchen but also for its medicinal powers.

Whatever the reason, studies seem to support an effect. In one double-blind study, published in 2001, British scientists followed 146 healthy adults over 12 weeks from November to February. Those who had been randomly selected to receive a daily garlic supplement came down with 24 colds during the study period, compared with 65 colds in the placebo group. The garlic group experienced 111 days of sickness, versus 366 for those given a placebo. They also recovered faster.

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Q & A: Twins and Fingerprints
By C. CLAIBORNE RAY, The New York Times, October 6, 2009

Q. Why do identical twins have different fingerprints? Why do we have fingerprints to begin with?

A. The probable answers to both questions are related to the minute differences in the mechanical forces each developing fetus experiences in the uterus as its cells proliferate.

Researchers have found that identical twins have a very high correlation of loops, whorls and ridges, but a review study last year in Circulation Research examining how complex structures like the circulatory system develop says that “the detailed ‘minutiae’ — where skin ridges meet, end or bifurcate — are different even between identical twins.” Even twins that develop from one zygote occupy different positions in the womb, and the variations are enough to make a difference.

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Mind: How Nonsense Sharpens the Intellect
By BENEDICT CAREY, The New York Times, October 6, 2009

In addition to assorted bad breaks and pleasant surprises, opportunities and insults, life serves up the occasional pink unicorn. The three-dollar bill; the nun with a beard; the sentence, to borrow from the Lewis Carroll poem, that gyres and gimbles in the wabe.

An experience, in short, that violates all logic and expectation. The philosopher Soren Kierkegaard wrote that such anomalies produced a profound “sensation of the absurd,” and he wasn’t the only one who took them seriously. Freud, in an essay called “The Uncanny,” traced the sensation to a fear of death, of castration or of “something that ought to have remained hidden but has come to light.”

At best, the feeling is disorienting. At worst, it’s creepy.

Now a study suggests that, paradoxically, this same sensation may prime the brain to sense patterns it would otherwise miss — in mathematical equations, in language, in the world at large.

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Findings: A High-Tech Hunt for Lost Art
By JOHN TIERNEY, The New York Times, October 6, 2009

If you believe, as Maurizio Seracini does, that Leonardo da Vinci’s greatest painting is hidden inside a wall in Florence’s city hall, then there are two essential techniques for finding it. As usual, Leonardo anticipated both of them.

First, concentrate on scientific gadgetry. After spotting what seemed to be a clue to Leonardo’s painting left by another 16th-century artist, Dr. Seracini led an international team of scientists in mapping every millimeter of the wall and surrounding room with lasers, radar, ultraviolet light and infrared cameras. Once they identified the likely hiding place, they developed devices to detect the painting by firing neutrons into the wall.

“Leonardo would love to see how much science is being used to look for his most celebrated masterpiece,” Dr. Seracini said, gazing up at the wall where he hopes the painting can be found, and then retrieved intact. “I can imagine him being fascinated with all this high-tech gear we’re going to set up.”

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Well: Probiotics: Looking Underneath the Yogurt Label
By TARA PARKER-POPE, The New York Times, September 29, 2009

When the label tells you the food you are buying “contains probiotics,” are you getting health benefits or just marketing hype? Perhaps a bit of both.

Probiotics are live micro-organisms that work by restoring the balance of intestinal bacteria and raising resistance to harmful germs. Taken in sufficient amounts, they can promote digestive health and help shorten the duration of colds. But while there are thousands of different probiotics, only a handful have been proved effective in clinical trials. Which strain of bacteria a given product includes is often difficult to figure out.

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Fossil Skeleton From Africa Predates Lucy
By JOHN NOBLE WILFORD, The New York Times, October 2, 2009

Lucy, meet Ardi.

Ardi, short for Ardipithecus ramidus, is the newest fossil skeleton out of Africa to take its place in the gallery of human origins. At an age of 4.4 million years, it lived well before and was much more primitive than the famous 3.2-million-year-old Lucy, of the species Australopithecus afarensis.

Since finding fragments of the older hominid in 1992, an international team of scientists has been searching for more specimens and on Thursday presented a fairly complete skeleton and their first full analysis. By replacing Lucy as the earliest known skeleton from the human branch of the primate family tree, the scientists said, Ardi opened a window to “the early evolutionary steps that our ancestors took after we diverged from our common ancestor with chimpanzees.”

The older hominid was already so different from chimps that it suggested “no modern ape is a realistic proxy for characterizing early hominid evolution,” they wrote.

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Evolution Run in Reverse? A Study Says It’s a One-Way Street
By CARL ZIMMER, The New York Times, September 29, 2009

Evolutionary biologists have long wondered if history can run backward. Is it possible for the proteins in our bodies to return to the old shapes and jobs they had millions of years ago?

Examining the evolution of one protein, a team of scientists declares the answer is no, saying new mutations make it practically impossible for evolution to reverse direction. “They burn the bridge that evolution just crossed,” said Joseph W. Thornton, a biology professor at the University of Oregon and co-author of a paper on the team’s findings in the current issue of Nature.

The Belgian biologist Louis Dollo was the first scientist to ponder reverse evolution. “An organism never returns to its former state,” he declared in 1905, a statement later dubbed Dollo’s law.

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Finding Order in the Apparent Chaos of Currents
By BINA VENKATARAMAN, The New York Times, September 29, 2009

Suppose a blob of dioxin-rich pesticide is spilled into Monterey Bay. It might quickly disperse to the Pacific Ocean. But hours later, a spill of the same size at the same spot could circle near the coastline, posing a greater danger to marine life. The briny surface waters of the bay churn so chaotically that a slight shift in the place or time an oil drop, a buoy — or even a person — falls in can dictate whether it is swept out to the open ocean or swirls near the shore.

But the results are not unpredictable. A team of scientists studying Monterey Bay since 2000 has found that underlying its complex, seemingly jumbled currents is a structure that guides the dispersal patterns, a structure that changes over time.

With the aid of high-frequency radar that tracks the speed and direction of the flowing waters, and computers that rapidly perform millions of calculations, the scientists found that a hidden skeleton guided whether floating debris lingered or exited the bay.

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Really? The Claim: Lack of Sleep Increases the Risk of Catching a Cold.
By ANAHAD O’CONNOR, The New York Times, September 22, 2009

THE FACTS As cold season approaches, many Americans stock up on their vitamin C and echinacea. But heeding the age-old advice about catching up on sleep might be more important.

Studies have demonstrated that poor sleep and susceptibility to colds go hand in hand, and scientists think it could be a reflection of the role sleep plays in maintaining the body’s defenses.

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Debate Flaring Over Grants for Research
By GARDINER HARRIS, The New York Times, September 22, 2009

Managers at the National Institutes of Health are increasingly ignoring the advice of scientific review panels and giving hundreds of millions of dollars a year to scientists whose projects are deemed less scientifically worthy than those denied money.

Many of the favored recipients are “new investigators,” or scientists who had never before received a grant from the health institutes. By skipping projects submitted by older scientists and instead choosing to issue grants to projects from less experienced scientists, agency managers hope to use the scientific equivalent of affirmative action to encourage graduate students and newly minted professors to make careers in academia.

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Scientist at Work: Carolyn Porco: An Odyssey From the Bronx to Saturn’s Rings
By DENNIS OVERBYE, The New York Times, September 22, 2009

It is twilight time on Saturn.

Shadows lengthened to stretch thousands of miles across the planet’s famous rings this summer as they slowly tilted edge-on to the Sun, which they do every 15 years, casting into sharp relief every bump and wiggle and warp in the buttery and wafer-thin bands that are the solar system’s most popular scenic attraction.

From her metaphorical perch on the bridge of the Cassini spacecraft, which has been orbiting Saturn for five years, Carolyn Porco, who heads the camera team, is ecstatic about the view. “It’s another one of those things that make you pinch yourself and say, ‘Boy am I lucky to be around now,’ ” Dr. Porco said. “For the first time in 400 years, we’re seeing Saturn’s rings in three dimensions.”

On Monday, Dr. Porco and the Cassini team released a grand view of the rings in all their shadowed glory, including clumps, spikes, undulations and waves two and a half miles high on the edge of one ring.

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(Cassini Website - many more pictures)
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Fossil Find Challenges Theories on T. Rex
By HENRY FOUNTAIN, The New York Times, September 18, 2009

Paleontologists said Thursday that they had discovered what amounted to a miniature prototype of Tyrannosaurus rex, complete with the oversize head, powerful jaws, long legs — and, as every schoolchild knows, puny arms — that were hallmarks of the king of the dinosaurs.

But this scaled-down version, which was about nine feet long and weighed only 150 pounds, lived 125 million years ago, about 35 million years before giant Tyrannosaurs roamed the earth. So the discovery calls into question theories about the evolution of T. rex, which was about five times longer and almost 100 times heavier.

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Remarkable Creatures: In a Shark’s Tooth, a New Family Tree
By SEAN B. CARROLL, The New York Times, September 15, 2009

“Like a locomotive with a mouth full of butcher knives.”

That is how a shark expert, Matt Hooper, described Carcharodon megalodon to the police chief in Peter Benchley’s novel “Jaws.” He was referring to the 50-foot-long, 50-ton body and enormous six- to seven-inch-long teeth that made the extinct megalodon shark perhaps the most awesome predator that has ever roamed the seas.

Hooper had just gotten his first glimpse of the massive great white shark that was terrorizing the residents of Amity Island. Hooper explained that the Latin name for the great white was Carcharodon carcharias and that “the closest ancestor we can find for it” was megalodon. So maybe, he speculated, this creature wasn’t merely a great white, but a surviving sea monster from an earlier era.

Hooper was toying with a simple and long-established idea: that the most feared predator in the ocean today, the great white shark, evolved from megalodon, the most fearsome predator of a few million years ago.

That is how the two species had been viewed, until recently, when new ways of looking at shark teeth, and new shark fossils from a Peruvian desert, convinced most experts that great whites are not descended from a megatoothed megashark. Rather, they evolved from a more moderate-size, smooth-toothed relative of mako sharks.

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New Clues to Sex Anomalies in How Y Chromosomes Are Copied
By NICHOLAS WADE, The New York Times, September 15, 2009

The first words ever spoken, so fable holds, were a palindrome and an introduction: “Madam, I’m Adam.”

A few years ago palindromes — phrases that read the same backward as forward — turned out to be an essential protective feature of Adam’s Y, the male-determining chromosome that all living men have inherited from a single individual who lived some 60,000 years ago. Each man carries a Y from his father and an X chromosome from his mother. Women have two X chromosomes, one from each parent.

The new twist in the story is the discovery that the palindrome system has a simple weakness, one that explains a wide range of sex anomalies from feminization to sex reversal similar to Turner’s syndrome, the condition of women who carry only one X chromosome.

The palindromes were discovered in 2003 when the Y chromosome’s sequence of bases, represented by the familiar letters G, C, T and A, was first worked out by David C. Page of the Whitehead Institute in Cambridge, Mass., and colleagues at the DNA sequencing center at Washington University School of Medicine in St. Louis.

They came as a total surprise but one that immediately explained a serious evolutionary puzzle, that of how the genes on the Y chromosome are protected from crippling mutations.

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Observatory: Fibers in a Cave Point to Ancient Craft Work
By HENRY FOUNTAIN, The New York Times, September 15, 2009

Archeologists looking for signs of what the ancient climate was like in the Caucasus Mountains have come across something else: signs of ancient craft work.

They found fibers of wild flax, up to 34,000 years old, in the Dzudzuana Cave in the former Soviet republic of Georgia. Some of the fibers were twisted and some were dyed, which indicates they were used for sewing clothes, weaving baskets or making ropes. That makes the fibers the oldest known to have been used by humans.

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Basics: Skipping Spouse to Spouse Isn’t Just a Man’s Game
By NATALIE ANGIER, The New York Times, September 1, 2009

In the United States and much of the Western world, when a couple divorces, the average income of the woman and her dependent children often plunges by 20 percent or more, while that of her now unfettered ex, who had been the family’s primary breadwinner but who rarely ends up paying in child support what he had contributed to the household till, climbs accordingly. The born-again bachelor is therefore perfectly positioned to attract a new, younger wife and begin building another family.

Small wonder that many Darwinian-minded observers of human mating customs have long contended that serial monogamy is really just a socially sanctioned version of harem-building. By this conventional evolutionary psychology script, the man who skips from one nubile spouse to another over time is, like the sultan who hoards the local maidenry in a single convenient location, simply seeking to “maximize his reproductive fitness,” to sire as many children as possible with as many wives as possible. It is the preferred male strategy, especially for powerful men, right? Sequentially or synchronously, he-men consort polygynously.

Or is it... )



First Trace of Color Found in Fossil Bird Feathers
By CARL ZIMMER, The New York Times, September 1, 2009

Birds, more than any other group of animals, are a celebration of color. They have evolved to every extreme of the spectrum, from the hot pink of flamingos to the shimmering blue of a peacock’s neck. Yet, for decades, paleontologists who study extinct birds have had to use their imaginations to see the colors in the fossils. Several feather fossils have been unearthed over the years, but they have always been assumed to be colorless vestiges.

Now a team of scientists has discovered color-producing molecules that have survived for 47 million years in the fossil of a feather. By analyzing those molecules, the researchers have shown that they would have given a bird the kind of dark, iridescent sheen found on starlings and other living birds.

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Essay: Finding a Scapegoat When Epidemics Strike
By DONALD G. McNEIL Jr., The New York Times, September 1, 2009

Whose fault was the Black Death?

In medieval Europe, Jews were blamed so often, and so viciously, that it is surprising it was not called the Jewish Death. During the pandemic’s peak in Europe, from 1348 to 1351, more than 200 Jewish communities were wiped out, their inhabitants accused of spreading contagion or poisoning wells.

The swine flu outbreak of 2009 has been nowhere near as virulent, and neither has the reaction. But, as in pandemics throughout history, someone got the blame — at first Mexico, with attacks on Mexicans in other countries and calls from American politicians to close the border.

In May, a Mexican soccer player who said he was called a “leper” by a Chilean opponent spat on his tormentor; Chilean news media accused him of germ warfare. In June, Argentines stoned Chilean buses, saying they were importing disease. When Argentina’s caseload soared, European countries warned their citizens against visiting it.

“When disease strikes and humans suffer,” said Dr. Liise-anne Pirofski, chief of infectious diseases at Albert Einstein College of Medicine and an expert on the history of epidemics, “the need to understand why is very powerful. And, unfortunately, identification of a scapegoat is sometimes inevitable.”

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Diving Deep for a Living Fossil
By WILLIAM J. BROAD, The New York Times, August 25, 2009

For 33 years, Peter A. Rona has pursued an ancient, elusive animal, repeatedly plunging down more than two miles to the muddy seabed of the North Atlantic to search out, and if possible, pry loose his quarry.

Like Ahab, he has failed time and again. Despite access to the world’s best equipment for deep exploration, he has always come back empty-handed, the creature eluding his grip.

The animal is no white whale. And Dr. Rona is no unhinged Captain Ahab, but rather a distinguished oceanographer at Rutgers University. And he has now succeeded in making an intellectual splash with a new research report, written with a team of a dozen colleagues.

They have gathered enough evidence to prove that his scientific prey — an organism a bit larger than a poker chip — represents one of the world’s oldest living fossils, perhaps the oldest. The ancestors of the creature, Paleodictyon nodosum, go back to the dawn of complex life. And the creature itself, known from fossils, was once thought to have gone extinct some 50 million years ago.

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Global Update: Viruses: Veterinarian in Australia Is Sickened After Being Exposed to a Rare Virus
By DONALD G. McNEIL Jr., The New York Times, August 25, 2009

A veterinarian in Australia has been hospitalized in critical condition after exposure to the rare Hendra virus, according to local reports, which said he fell ill after treating two dying horses on a Queensland stud farm.

The virus was found in 1994 and has never been seen outside Australia since its discovery in Hendra, a Brisbane suburb. There have been only a dozen outbreaks, but the virus has proved lethal to horses and to humans caring for them. About 70 percent of the horses infected have died, and so have three of the six people known to have caught it from them — a veterinarian, a farmer and a prominent horse trainer, according to the Australian Broadcasting Corporation.

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Ancient Man Hurt Coasts, Paper Says
By CORNELIA DEAN, The New York Times, August 21, 2009

The idea that primitive hunter-gatherers lived in harmony with the landscape has long been challenged by researchers, who say Stone Age humans in fact wiped out many animal species in places as varied as the mountains of New Zealand and the plains of North America. Now scientists are proposing a new arena of ancient depredation: the coast.

In an article in Friday’s issue of the journal Science, anthropologists at the Smithsonian Institution and the University of Oregon cite evidence of sometimes serious damage by early inhabitants along the coasts of the Aleutian Islands, New England, the Gulf of Mexico, South Africa and California’s Channel Islands, where the researchers do fieldwork.

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"...projects that have little or nothing to do with the public good. Things like fruit fly research..." - Sarah Palin


Observatory: Variations in Perception of Bitter Go Way Back
By HENRY FOUNTAIN, The New York Times, August 18, 2009

Some people can’t perceive bitter tastes very well. Now a study from Spain shows that some Neanderthals were in the same boat.

Bitter taste perception in humans has been studied most thoroughly with a bitter-tasting chemical, PTC, that is related to compounds in Brussels sprouts and similar foods. About one-quarter of people don’t taste PTC.

A gene, TAS2R38, encodes proteins that are part of taste receptors on the tongue. There are several variants of the gene, a dominant “taster” type and a recessive “nontaster” type, which occur with about the same frequency. Only if a person inherits a recessive type from both parents would she be unable to taste PTC.

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Patient Money: The Expense of Eating With Celiac Disease
By LESLEY ALDERMAN, The New York Times, August 15, 2009

YOU would think that after Kelly Oram broke more than 10 bones and experienced chronic stomach problems for most of his life, someone (a nurse? a doctor?) might have wondered if something fundamental was wrong with his health. But it wasn’t until Mr. Oram was in his early 40s that a doctor who was treating him for a neck injury became suspicious and ordered tests, including a bone scan.

It turned out that Mr. Oram, a music teacher who lives in White Plains, had celiac disease, an underdiagnosed immune disorder set off by eating foods containing gluten, a protein found in wheat, rye and barley.

Celiac disease damages the lining of the small intestine, making it difficult for the body to absorb nutrients. Victims may suffer from mild to serious malnutrition and a host of health problems, including anemia, low bone density and infertility. Celiac affects one out of 100 people in the United States, but a majority of those don’t know they have the disease, said Dr. Joseph A. Murray, a gastroenterologist at the Mayo Clinic in Minnesota who has been studying the disease for two decades. The disease can be detected by a simple blood test, followed by an endoscopy to check for damage to the small intestine.

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Mutation Tied to Need for Less Sleep Is Discovered
By TARA PARKER-POPE, The New York Times, August 14, 2009

Researchers have found a genetic mutation in two people who need far less sleep than average, a discovery that might open the door to understanding human sleep patterns and lead to treatments for insomnia and other sleep disorders.

The finding, published in the Friday issue of the journal Science, marks the first time scientists have identified a genetic mutation that relates to sleep duration in any animal or human.

Although the mutation has been identified in only two people, the power of the research stems from the fact that the shortened sleep effect was replicated in mouse and fruit-fly studies. As a result, the research now gives scientists a clearer sense of where to look for genetic traits linked to sleep patterns.

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Q & A: Red Hot Chili Peppers
By C. CLAIBORNE RAY, The New York Times, August 11, 2009

Q. If I eat a raw jalapeño pepper, my mouth is afire, my eyes water and my nose runs. How can some people eat pepper after pepper without pain? Have they destroyed the sensory receptors in their mouths and throats?

A. No receptors are destroyed, said Harry T. Lawless, a professor of food science at Cornell and an expert in the taste, smell and sensory evaluation of food. Instead, “people who eat a lot of the stuff tend to develop a tolerance that we call desensitization,” he said.

“There is nothing harmful in the capsaicin molecule, the active ingredient of hot peppers,” he said. “Capsaicin is kind of a harmless drug, and like any drug we develop a tolerance to it.”

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A Conversation With Paul Root Wolpe: Scientist Tackles Ethical Questions of Space Travel
By CLAUDIA DREIFUS, The New York Times, August 11, 2009

Q. AS NASA’S CHIEF BIOETHICIST, WHAT DOES YOUR WORK INVOLVE?

A. I’m an adviser to the chief medical officer for the agency. I don’t make decisions. Instead, I analyze situations and policies and offer bioethical perspectives on specific problems.

NASA does hundreds of research studies. Every astronaut who goes into space is, essentially, a human research subject. NASA’s looking at the effects of weightlessness, of G-forces and radiation on the human body. One of the things I do is look over the research protocols and make sure they are in compliance with earth-bound regulations about informed consent and health and safety. I also try to help solve some of the thorny ethical problems of medical care for astronauts in space.

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Birth Rate Is Said to Fall as a Result of Recession
By SAM ROBERTS, The New York Times, August 7, 2009

For the first time since the decade began, Americans are having fewer babies, and some experts are blaming the economy.

“It’s the recession,” said Andrew Hacker, a sociologist at Queens College of the City University of New York. “Children are the most expensive item in every family’s budget, especially given all the gear kids expect today. So it’s a good place to cut back when you’re uncertain about the future.”

In 2007, the number of births in the United States broke a 50-year-old record high, set during the baby boom. But last year, births began to decline nationwide, by nearly 2 percent, according to provisional figures released last week.

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By Degrees: White Roofs Catch On as Energy Cost Cutters
By FELICITY BARRINGER, The New York Times, July 30, 2009

SAN FRANCISCO — Returning to their ranch-style house in Sacramento after a long summer workday, Jon and Kim Waldrep were routinely met by a wall of heat.

“We’d come home in the summer, and the house would be 115 degrees, stifling,” said Mr. Waldrep, a regional manager for a national company.

He or his wife would race to the thermostat and turn on the air-conditioning as their four small children, just picked up from day care, awaited relief.

All that changed last month. “Now we come home on days when it’s over 100 degrees outside, and the house is at 80 degrees,” Mr. Waldrep said.

Their solution was a new roof: a shiny plasticized white covering that experts say is not only an energy saver but also a way to help cool the planet.

Relying on the centuries-old principle that white objects absorb less heat than dark ones, homeowners like the Waldreps are in the vanguard of a movement embracing “cool roofs” as one of the most affordable weapons against climate change.

Studies show that white roofs reduce air-conditioning costs by 20 percent or more in hot, sunny weather. Lower energy consumption also means fewer of the carbon dioxide emissions that contribute to global warming.

What is more, a white roof can cost as little as 15 percent more than its dark counterpart, depending on the materials used, while slashing electricity bills.

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Research Undermines Dog Domestication Theory
By NICHOLAS WADE, The New York Times, August 4, 2009

Few people spend their honeymoon catching and drawing blood from village dogs up and down Africa. But Ryan and Corin Boyko, two anthropologists at the University of California, Davis, chose this way to collect valuable genetic data that is casting a new light on the domestication of dogs.

The opportunity to combine love with science arose when Ryan’s brother Adam Boyko, a biologist at Cornell University, was discussing dog genetics with his professor, Carlos Bustamante. Dr. Bustamante, just back from a visit to Venezuela, remarked on how small the street dogs there were.

The two researchers wondered if the dogs carried a recently discovered gene that downsizes dogs from wolves and is found in all small dog breeds. Dr. Bustamante said the idea could be explored by collecting street dogs from up and down South America. Dr. Boyko, knowing his brother was planning a honeymoon in Africa but lacked the money to go far, proposed that the survey be done in Africa instead. “I paid for half their honeymoon,” Dr. Bustamante said.

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Really? The Claim: Cold Temperatures Improve Sleep
By ANAHAD O’CONNOR, The New York Times, August 4, 2009

THE FACTS

Avoiding caffeine, sticking to a schedule and drinking a glass of warm milk are the usual tips for a good night’s rest. But the right room temperature can also play a crucial role.

Studies have found that in general, the optimal temperature for sleep is quite cool, around 60 to 68 degrees Fahrenheit. For some, temperatures that fall too far below or above this range can lead to restlessness.

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Basics: Finally, the Spleen Gets Some Respect
By NATALIE ANGIER, The New York Times, August 4, 2009

As a confirmed crab apple who has often been compared to the splenetic Lucy Van Pelt character from Peanuts, I am gratified to learn that should my real spleen ever decide to vent in earnest, the outburst may just help save my life.

Scientists have discovered that the spleen, long consigned to the B-list of abdominal organs and known as much for its metaphoric as its physiological value, plays a more important role in the body’s defense system than anyone suspected.

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The final story is my favorite - I knew someone in high school who was a decedent of Phineas Gage.


Dot Earth:Era of Trans-Arctic Shipping Nigh
By Andrew C. Revkin, New York Times blog, July 28, 2009

Since 1553, when Sir Hugh Willoughby led an expedition north in search of a sea passage over Russia to the Far East, mariners have dreamed of such a shortcut. (Willoughby and his crew, apparently asphyxiated by carbon monoxide after sealing up their boat against brutal cold, froze to death.)

In part because of warming and the retreat and thinning of Arctic sea ice in summer, this northern sea route is slowly becoming a reality. Russian vessels have long hauled ore and oil along the country’s sprawling northern coast, but no commercial ships under other flags have passed between Asia and Western Europe. Now, a German company, the Beluga Group of Bremen, has a ship poised to make what appears to be the first such trip, an 8,000-mile shortcut compared with alternate routes. The “Arctic Rush” is on.

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Scientist at Work: Tucker Childs: Linguist’s Preservation Kit Has New Digital Tools
By CHRIS NICHOLSON, The New York Times, July 28, 2009

TEI, Sierra Leone — Jogue, yipe, simoi are three short words for foods in Kim, a language in Sierra Leone that Tucker Childs has been trying, for the past three years, to write down, record and understand.

Kim is a dying language, and Dr. Childs a field linguist. From his base here in Tei, a small fishing village on the Waanje River, he canoes up the narrow waterways that cut across the river’s floodplain, and hikes a few miles inland, to where the last Kim communities remain. Based on recordings taken there, he has devised an alphabet and compiled a dictionary and is finishing a book on the grammar.

Africa has about 2,000 of the world’s 6,000 languages. Many are still unwritten, some have yet to be named and many will probably disappear. For centuries, social and economic incentives have been working against Kim and in favor of Mende, a language used widely in the region, until finally, Dr. Childs speculates, the Kim language has been pushed to the verge of extinction.

It used to be that field linguists like Dr. Childs, a scattered corps working against time to salvage the world’s endangered tongues — more than 3,000 at last count — scribbled data in smeared notebooks and stored sounds on cassette tapes, destined to rot in boxes. But linguistics has gone digital. Dr. Childs now uses a solid-state recorder, and he has applications that will analyze the elements of a vowel in seconds or compare sounds across languages.

Using Geographic Information Systems, software that translates data into maps, he and his research assistants, Hannah Sarvasy and Ali Turay, pinpoint villages that are not to be found on any official map. “There’s a whole bunch of reasons linguists want these languages preserved,” Dr. Childs said, “but for me it’s more an emotional thing. It’s not noblesse oblige, it’s capitalist oblige. These people are totally peripheralized.”

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Brain Power: In Battle, Hunches Prove to Be Valuable
By BENEDICT CAREY, The New York Times, July 28, 2009

The sight was not that unusual, at least not for Mosul, Iraq, on a summer morning: a car parked on the sidewalk, facing opposite traffic, its windows rolled up tight. Two young boys stared out the back window, kindergarten age maybe, their faces leaning together as if to share a whisper.

The soldier patrolling closest to the car stopped. It had to be hot in there; it was 120 degrees outside. “Permission to approach, sir, to give them some water,” the soldier said to Sgt. First Class Edward Tierney, who led the nine-man patrol that morning.

“I said no — no,” Sergeant Tierney said in a telephone interview from Afghanistan. He said he had an urge to move back before he knew why: “My body suddenly got cooler; you know, that danger feeling.”

The United States military has spent billions on hardware, like signal jamming technology, to detect and destroy what the military calls improvised explosive devices, or I.E.D.’s, the roadside bombs that have proved to be the greatest threat in Iraq and now in Afghanistan, where Sergeant Tierney is training soldiers to foil bomb attacks.

Still, high-tech gear, while helping to reduce casualties, remains a mere supplement to the most sensitive detection system of all — the human brain. Troops on the ground, using only their senses and experience, are responsible for foiling many I.E.D. attacks, and, like Sergeant Tierney, they often cite a gut feeling or a hunch as their first clue.

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TierneyLab - Putting Ideas in Science to the Test: The Curious Case of Phineas Gage, Refocused
By Benedict Carey, The New York Times, July 22, 2009

The medical literature is punctuated with gruesome, anonymous case studies but one of the most ghastly images of all comes with name: Phineas Gage, a Vermont railroad worker who, in 1848, was skewered through his brain by an iron bar the size of large fireplace poker in an explosion. Gage survived, became an object of medical fascination, and images of his impaled skull (preserved at Harvard University) later landed in textbooks to illustrate the function of the frontal lobes. With his frontals mangled, the once-reliable Mr. Gage became a lout and wastrel. Or so the textbook version goes.

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Illnesses Afflict Homes With a Criminal Past
By SHAILA DEWAN and ROBBIE BROWN, The New York Times, July 14, 2009

WINCHESTER, Tenn. — The spacious home where the newly wed Rhonda and Jason Holt began their family in 2005 was plagued by mysterious illnesses. The Holts’ three babies were ghostlike and listless, with breathing problems that called for respirators, repeated trips to the emergency room and, for the middle child, Anna, the heaviest dose of steroids a toddler can take.

Ms. Holt, a nurse, developed migraines. She and her husband, a factory worker, had kidney ailments.

It was not until February, more than five years after they moved in, that the couple discovered the root of their troubles: their house, across the road from a cornfield in this town some 70 miles south of Nashville, was contaminated with high levels of methamphetamine left by the previous occupant, who had been dragged from the attic by the police.

The Holts’ next realization was almost as devastating: it was up to them to spend the $30,000 or more that cleanup would require.

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Vocal Minority Insists It Was All Smoke and Mirrors
By JOHN SCHWARTZ, The New York Times, July 14, 2009

They walk among us, seemingly little different from you or me. Most of the time, you would never know of their true nature — except that occasionally, they feel compelled to speak up.

Take an example from Lens, this newspaper’s photography blog. A recent feature,“ Dateline: Space,” displayed stunning NASA photographs, including the iconic photo of Buzz Aldrin standing on the lunar surface.

The second comment on the feature stated flatly, “Man never got to the moon.”

The author of the post, Nicolas Marino, went on to say, “I think media should stop publicizing something that was a complete sham once and for all and start documenting how they lied blatantly to the whole world.”

Forty years after men first touched the lifeless dirt of the Moon — and they did. Really. Honest. — polling consistently suggests that some 6 percent of Americans believe the landings were faked and could not have happened. The series of landings, one of the greatest gambles of the human race, was an elaborate hoax developed to raise national pride, many among them insist.

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Administration Seeks to Restrict Antibiotics in Livestock
By GARDINER HARRIS, The New York Times, July 14, 2009

WASHINGTON — The Obama administration announced Monday that it would seek to ban many routine uses of antibiotics in farm animals in hopes of reducing the spread of dangerous bacteria in humans.

In written testimony to the House Rules Committee, Dr. Joshua Sharfstein, principal deputy commissioner of food and drugs, said feeding antibiotics to healthy chickens, pigs and cattle — done to encourage rapid growth — should cease. And Dr. Sharfstein said farmers should no longer be able to use antibiotics in animals without the supervision of a veterinarian.

Both practices lead to the development of bacteria that are immune to many treatments, he said.

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The New Old Age - Caring and Coping: With Friends Aplenty, Many Widows Choose Singlehood
By Anne C. Roark, The New York Times, July 13, 2009

When Jane Austin, a retired schoolteacher from Rockford, Ill., suddenly became a widow at age 69, her older brother called from Florida to warn her about “all those old guys who are looking for a nurse . . . or an insurance settlement.”

The warning wasn’t necessary. One husband had been enough, thank you very much. After nearly 47 years of marriage, Ms. Austin knew she would miss her husband’s company, but like many widows today, she had plans for the future — travel and a new part-time career as a school curriculum consultant — none of which involved managing another man’s domestic life.

That women like Ms. Austin aren’t interested in remarrying is likely to be unwelcome news for widowers who assume that the storied “casserole brigade” will always line up on their doorsteps. The notion of love-starved widows has become so entrenched in American culture that it has been a sitcom staple and the subject of an endless succession of jokes.

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Testing Evolution’s Role in Finding a Mate
By SARAH ARNQUIST, The New York Times, July 7, 2009

Scientists have long observed that women tend to be pickier than men when choosing a mate. The usual explanation is evolutionary: because women have a bigger investment in reproduction — they are the ones who have to endure pregnancy, childbirth and breast-feeding — they need to hedge their bets against selecting a dud to be the father.

In recent years, the emergence of speed dating has given psychologists, economists and political scientists new ways to test this and other hypotheses about mating. Because participants can be randomly assigned to groups and have no prior information about other participants, three-minute speed-dating sessions are about as close to a controlled experiment as researchers are likely to get.

Now, two scientists at Northwestern University have published an experiment that challenges the evolutionary hypothesis. The study by Eli J. Finkel and Paul W. Eastwick was published last month in the journal Psychological Science.The experiment looked at speed-dating sessions to determine whether men or women were choosier. The answer, it turned out, was neither. Regardless of gender, people who were instructed to approach other daters were less selective — that is, they were more likely to ask to meet later for a date.

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Personal Health: Updating a Standard: Fetal Monitoring
By JANE E. BRODY, The New York Times, July 7, 2009

Electronic fetal monitoring during labor and delivery was introduced into obstetrical practice in the early 1970s in hopes that it would reduce the risk of cerebral palsy and death resulting from inadequate oxygen to the fetal brain.

The monitors continually measure the fetal heart rate and produce tracings on a screen and paper that can alert a doctor to a baby who is doing poorly under the stress of labor. It is up to the doctor to try to alleviate the problem and, if those measures do not help, to decide whether to deliver the baby vaginally with forceps or surgically by Caesarean.

Today, more than 85 percent of the four million babies born alive in this country each year are assessed by electronic fetal monitoring, amid continuing controversy over whether it does more harm than good. New guidelines on fetal monitoring, published this month, aim to bring more consistency to how doctors interpret the results and act on them.

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In Public Housing, Talking Up the Recycling Bin
By MIREYA NAVARRO, The New York Times, July 4, 2009

Wearing a purple sweatsuit and leaning on a cane, Gloria Allen, 82, was hobbling down a hallway in a public housing project in Morningside Heights, knocking on doors and shouting, “Recycling education!”

There was no answer at the next apartment, but as soon as she detected movement inside, Ms. Allen, a retired printing-company worker, began her pitch.

“Please come out, baby,” she purred. “Please come out so we can educate you on how to recycle.”

The typical neighborhood environmentalist is often pictured as young and affluent, the kind of person who can afford a hybrid car and screen-printed hemp fabrics. But at General Grant Houses, a sprawling public housing development off West 125th Street in Manhattan, the eco-conscious are mainly people like Ms. Allen and Sarah Martin, who as leaders of the residents’ association fret as much about backed-up pipes as they do about recycling.

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Observatory: Warmer Winters and Shrinking Sheep
By KENNETH CHANG, The New York Times, July 7, 2009

On a remote Scottish island, the sheep are shrinking, and the cause appears to be the warming of winter.

The wild Soay sheep that live on the island of Hirta in the North Atlantic have been under careful scientific observation since 1985, partly because the island ecosystem is a simple one consisting of the sheep and the vegetation they eat.

Timothy Coulson, a professor of population biology at Imperial College London, and his colleagues analyzed the sheep data and found that the weight of the average female Soay had decreased about three ounces a year, or about 5 percent over the past quarter-century.

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Vatican’s Celestial Eye, Seeking Not Angels but Data
By GEORGE JOHNSON, The New York Times, June 23, 2009

MOUNT GRAHAM, Ariz. — Fauré’s “Requiem” is playing in the background, followed by the Kronos Quartet. Every so often the music is interrupted by an electromechanical arpeggio — like a jazz riff on a clarinet — as the motors guiding the telescope spin up and down. A night of galaxy gazing is about to begin at the Vatican’s observatory on Mount Graham.

“Got it. O.K., it’s happy,” says Christopher J. Corbally, the Jesuit priest who is vice director of the Vatican Observatory Research Group, as he sits in the control room making adjustments. The idea is not to watch for omens or angels but to do workmanlike astronomy that fights the perception that science and Catholicism necessarily conflict.

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Flutes Offer Clues to Stone-Age Music
By JOHN NOBLE WILFORD, The New York Times, June 25, 2009

At least 35,000 years ago, in the depths of the last ice age, the sound of music filled a cave in what is now southwestern Germany, the same place and time early Homo sapiens were also carving the oldest known examples of figurative art in the world.

Music and sculpture — expressions of artistic creativity, it seems — were emerging in tandem among some of the first modern humans when they first began spreading through Europe or soon after.

Archaeologists reported Wednesday the discovery last fall of a bone flute and two fragments of ivory flutes that they said represent the earliest known flowering of music-making in Stone Age culture. They said the bone flute with five finger holes, found at Hohle Fels Cave in the hills west of Ulm, was “by far the most complete of the musical instruments so far recovered from the caves” in a region where pieces of other flutes have been turning up in recent years.

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Obesity May Have Offered Edge Over TB
By RONI CARYN RABIN, The New York Times, June 24, 2009

Over the course of human evolution, people with excess stores of fat have been more likely to survive famines, many scientists believe, living on to pass their genes to the next generation.

But these days, obesity is thought to be harmful, leading to chronic inflammation and metabolic disorders that set the stage for heart disease. So what went awry? When did excess fat stop being a protective mechanism that assured survival and instead become a liability?

A provocative new hypothesis suggests that in some people, fat not only stores energy but also revs up the body’s immune system. This subgroup may have enjoyed a survival advantage in the 1800s, when people were plagued by a disease that decimated Europe: tuberculosis.

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U.S. Cites Emergency in Asbestos-Poisoned Town
By CORNELIA DEAN, The New York Times, June 18, 2009

The Environmental Protection Agency declared a public health emergency on Wednesday in and near Libby, Mont., where over the course of decades asbestos contamination in a vermiculite mine has left hundreds of people dead or sickened from lung diseases.

It was the first health emergency ever declared under the Superfund law, the 1980 statute that governs sites contaminated or threatened by hazardous substances. The Libby site has been designated a Superfund priority since 2002.

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Report on Gene for Depression Is Now Faulted
By BENEDICT CAREY, The New York Times, June 17, 2009

One of the most celebrated findings in modern psychiatry — that a single gene helps determine one’s risk of depression in response to a divorce, a lost job or another serious reversal — has not held up to scientific scrutiny, researchers reported Tuesday.

The original finding, published in 2003, created a sensation among scientists and the public because it offered the first specific, plausible explanation of why some people bounce back after a stressful life event while others plunge into lasting despair.

The new report, by several of the most prominent researchers in the field, does not imply that interactions between genes and life experience are trivial; they are almost certainly fundamental, experts agree.

But it does suggest that nailing down those factors in a precise way is far more difficult than scientists believed even a few years ago, and that the original finding could have been due to chance. The new report is likely to inflame a debate over the direction of the field itself, which has found that the genetics of illnesses like schizophrenia and bipolar disorder remain elusive.

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In one view of the beginnings of life, depicted in an animation, carbon monoxide molecules condense on hot mineral surfaces underground to form fatty acids, above, which are then expelled from geysers.

New Glimpses of Life’s Puzzling Origins
By NICHOLAS WADE, The New York Times, June 16, 2009

Some 3.9 billion years ago, a shift in the orbit of the Sun’s outer planets sent a surge of large comets and asteroids careening into the inner solar system. Their violent impacts gouged out the large craters still visible on the Moon’s face, heated Earth’s surface into molten rock and boiled off its oceans into an incandescent mist.

Yet rocks that formed on Earth 3.8 billion years ago, almost as soon as the bombardment had stopped, contain possible evidence of biological processes. If life can arise from inorganic matter so quickly and easily, why is it not abundant in the solar system and beyond? If biology is an inherent property of matter, why have chemists so far been unable to reconstruct life, or anything close to it, in the laboratory?

The origins of life on Earth bristle with puzzle and paradox. Which came first, the proteins of living cells or the genetic information that makes them? How could the metabolism of living things get started without an enclosing membrane to keep all the necessary chemicals together? But if life started inside a cell membrane, how did the necessary nutrients get in?

The questions may seem moot, since life did start somehow. But for the small group of researchers who insist on learning exactly how it started, frustration has abounded. Many once-promising leads have led only to years of wasted effort. Scientists as eminent as Francis Crick, the chief theorist of molecular biology, have quietly suggested that life may have formed elsewhere before seeding the planet, so hard does it seem to find a plausible explanation for its emergence on Earth.

In the last few years, however, four surprising advances have renewed confidence that a terrestrial explanation for life’s origins will eventually emerge.

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A Conversation With Bert Hölldobler: Insects Succeeding Through Cooperation
By CLAUDIA DREIFUS, The New York Times, June 16, 2009

At 72, Bert Hölldobler, a professor of life sciences at Arizona State University and a professor emeritus at the University of Würzburg in Germany, is one of the world’s great ant experts. Along with his collaborator, E. O. Wilson, Dr. Hölldobler won a Pulitzer Prize in 1991 for “The Ants.” The two wrote a second book in 2008, “The Superorganism: The Beauty, Elegance and Strangeness of Insect Societies.”

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Q & A: A Charley Horse in Bed
By C. CLAIBORNE RAY, The New York Times, June 9, 2009

Q. Why does one get muscle cramps while sleeping or resting?

A. In most cases, there is no apparent cause for hard knots in the muscles, usually in the calves, that are not associated with vigorous exercise, medical authorities say. Nighttime attacks of leg cramps are quite common, especially in older people, and can be very painful though usually not dangerous.
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The Doctor’s World: Is This a Pandemic? Define ‘Pandemic’
By LAWRENCE K. ALTMAN, M.D., The New York Times, June 9, 2009

After decades of warnings about the inevitability of another pandemic of influenza, it is astonishing that health officials have failed to make clear to the public, even to many colleagues, what they mean by the word pandemic.

Generations of people have used the term to describe widespread epidemics of influenza, cholera and other diseases. But as the new H1N1 swine influenza virus spreads from continent to continent, it is clear that a useful definition is far more complicated and elusive than officials had thought.

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Basics: Brainy Echidna Proves Looks Aren’t Everything
By NATALIE ANGIER, The New York Times, June 9, 2009

If you wanted to push yourself to the outermost chalk line of human endurance, you might consider an ultramarathon, or a solo row across the Atlantic Ocean, or being nominated to the United States Supreme Court.

Or you could try studying the long-beaked echidna, one of the oldest, rarest, shyest, silliest-looking yet potentially most illuminating mammals on earth.

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